Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015920181.1_cds_XP_016469370.1_61918
CDS Infomation

[gene=LOC107791752] [db_xref=GeneID:107791752] [protein=2-isopropylmalate synthase B] [protein_id=XP_016469370.1] [location=join(159916..160556,161551..161764,161848..161928,163629..163721,163811..163897,165195..165295,165751..165784,165861..165935,166793..166876,166988..167122,167923..168068,168823..168952)] [gbkey=CDS]
Sequence

ATGGCGTCTATCACCATAAACCATTCATTTTCCCGTAACCCTAACATCTCATTCCATCCC
CAAAATCCTCTCATTCAAACCCAAGCTCTCTTCAATTTCAAACCATCAATCTCCAAATGT
TCCCCTATTATCCACTGCGCAATCCGCCGTCGACCCGAATATACCCCGAGCCACATTCCC
GACCCGAACTACATTCGCATCTTCGACACCACTCTCCGCGACGGCGAACAATCCCCAGGC
GCCACAATGACCACAAAAGAAAAACTCGACGTTGCGCGTCAGTTAGCTAAGCTTGGTGTT
GACATAATTGAAGCCGGTTTTCCTGCTTCTTCTGAAGCTGATCTCGAAGCTGTGAAATTA
ATAGCGAAGGAAGTTGGAAATGGTGTGAATGAAGAGGGACATGTTCCGGTAATTTGTGGA
CTTGCGAGGTGTAATAAGAGGGATATTGATAAGGCTTGGGAGGCTGTGAAGTATGCGAAA
AAACCGAGGATTCATACGTTTATTGCGACTAGTGAGATACATATGAAGTTTAAGTTGAAG
ATGAGTAGAGATGAAGTTGTGGAGAAAGCTAGGAGTATGGTTGCTTATGCTAGGAGTATT
GGTTGTGAGGATGTTGAATTTAGCCCAGAAGATGCTGGAAGATCCGATCCAGAGTTCCTC
TATCATATCCTTGGAGAGGTCATCAAAGCTGGGGCAACAACCCTTAACATCCCTGATACT
GTTGGATACACTGTTCCCAGCGAATTTGGAAAATTGATTGCTGATATAAAGGCCAATACC
CCAGGAATTGGAGATGTGATCATCTCAACACACTGCCAGAACGATCTTGGGCTTTCTACT
GCCAACACCTTAGCTGGAGCATGCGCAGGTGCAAGACAAGTAGAAGTGACCATCAACGGA
ATCGGTGAAAGAGCTGGAAATGCTTCTTTGGAGGAGGTTGTAATGGCCTTAAAATGTCGT
GGAGAGCAAGTACTAGGTGGCCTGTATACAGGAATTAATACACAACATATACTCATGTCA
AGCAAGATGGTAGAGGAGTACACCGGGCTTCATGTGCAGCCACACAAGGCCATTGTTGGA
GCTAATGCGTTTGCTCATGAAAGTGGCATCCATCAGGATGGAATGTTAAAACACAAAGAT
ACATATGAGATTATATCTCCTGAAGATATTGGGCTTAACCGAGTTAATGAATCTGGCATC
GTCCTTGGGAAACTCAGTGGGCGTCATGCTTTGCAAGCCAAAATGCTCGAGCTTGGATAC
GATATTGAGGGAAAAGAACTTGAGGACCTCTTTTGGCGATTCAAATCTGTGGCCGAGAAG
AAAAAGAAAATTACAGATGATGACCTGATAGCATTAATGTCAGATGAAGTTTTCCAGCCT
CAATTTGTTTGGCAACTTGAAAATGTACAGGTTACATGTGGAAGTCTTGGCCTTTCTACG
GCAACTGTTAAGCTCATTGACGCTGATGGTCAAGAGCATGTTTCTTGTTCTGTTGGAACG
GGGCCAGTTGATGCGGCTTATAAGGCAGTTGATCTCATTGTAAAGGTACCTGTAGCACTC
CTTGAATATTCCTTGAATGCAGTCACGGAAGGTATAGATGCCATAGCTTCAACCAGAGTT
TTAATTCGTGGGGAGAATGGCCATACATCAACCCATGCTTTAACTGGAGAGACTGTACAC
CGTTCTTTTAGTGGAACCGGAGCAGATATGGATATTGTTATCTCCAGTGTCCGAGCCTAT
ATTGGTGCATTGAATAAGATGTTGAGTTTCAGAAAGCTGGTATCGAAACACAGCAAACCT
GAAGGCAGTGCAGTCGTATAG

Peptide Sequence

PEP ID

XP_016469370.1
PEP Infomation

PREDICTED: 2-isopropylmalate synthase B [Nicotiana tabacum]
Sequence

MASITINHSFSRNPNISFHPQNPLIQTQALFNFKPSISKCSPIIHCAIRRRPEYTPSHIP
DPNYIRIFDTTLRDGEQSPGATMTTKEKLDVARQLAKLGVDIIEAGFPASSEADLEAVKL
IAKEVGNGVNEEGHVPVICGLARCNKRDIDKAWEAVKYAKKPRIHTFIATSEIHMKFKLK
MSRDEVVEKARSMVAYARSIGCEDVEFSPEDAGRSDPEFLYHILGEVIKAGATTLNIPDT
VGYTVPSEFGKLIADIKANTPGIGDVIISTHCQNDLGLSTANTLAGACAGARQVEVTING
IGERAGNASLEEVVMALKCRGEQVLGGLYTGINTQHILMSSKMVEEYTGLHVQPHKAIVG
ANAFAHESGIHQDGMLKHKDTYEIISPEDIGLNRVNESGIVLGKLSGRHALQAKMLELGY
DIEGKELEDLFWRFKSVAEKKKKITDDDLIALMSDEVFQPQFVWQLENVQVTCGSLGLST
ATVKLIDADGQEHVSCSVGTGPVDAAYKAVDLIVKVPVALLEYSLNAVTEGIDAIASTRV
LIRGENGHTSTHALTGETVHRSFSGTGADMDIVISSVRAYIGALNKMLSFRKLVSKHSKP
EGSAVV

Transcript Sequence

Gene sequence data has not been registered.